Baked Spaghetti Cups (with Veggies!)

Baked Spaghetti Cups are a fun, healthy, and easy weeknight meal the whole family with love. Even better, it’s the perfect recipe to make with little helpers. My 4 year old, Henry, pretty much makes this whole dish from start to finish on his own. It’s one of his favorite dinners to make and eat! You can customize your spaghetti cups with whatever veggies or add-ins your family enjoys. Baked Spaghetti Cups are also great to make ahead and warm up as a quick meal or pack-up in a lunch box to-go. Kids will think it’s so fun to eat the hand-held spaghetti, but the cups are also just as easy to eat with a fork. I think the recipe is a “win” all around, but I would love to know what you think! Come find me on Instagram or comment below if you give these spaghetti cups a try!

Substitutions and Add-in Suggestions for Baked Spaghetti Cups:

  • Veggies! We like to use shredded raw carrot and finely chopped spinach in this recipe, but you can really add in any cooked or raw vegetables that you like. Chopped broccoli, bell peppers, defrosted chopped spinach, peas…the possabilies are endless!
  • Have some leftover meat? Ground turkey, shredded chicken, or diced ham would all work well mixed into the spaghetti.
  • Dairy-free? Feel free to use a dairy-free shredded cheese or leave out the cheese completely. As long as the egg is in the mix, the cups will hold together when baked. Unfortunately, I have not tested an egg-free version on this recipe, and can’t suggest one that would work.
  • Spaghetti: I have made this recipe with all kinds of spaghetti, even the Banza chickpea based pasta worked well (and adds lots of plant-based protein!). Depending on your package size, just eyeball about 6-ounces of spaghetti to get the right amount to fill 12 cups. But it’s always ok if you have a little bit extra and make a few more cups with it.

Scissors in the kitchen! And other ways kids can help make Baked Spaghetti Cups:

  • Wash some kid-safe scissors and have your child snip the cooked spaghetti into smaller pieces. Cutting the spaghetti makes it easier to fit into the muffin cups, but as long as you broke the spaghetti before putting in pot, it doesn’t really matter if all the spaghetti cut in a uniform way. Having your child cut the spaghetti with scissors is just a fun and novel cooking activity to get little helpers excited about making this dish. Plus, it’s a great sensory and fine motor activity for little hands.
  • Have everything out and ready to dump into the cooked spaghetti. If you have your child help crack the eggs for the recipe, make sure to crack them into a small, separate bowl so you can easily remove any pieces of shell.
  • Mix and fill the cups. This will get messy, but kids can use their hands to scoop up the spaghetti and place it in the cups. Have a dish towel near by to wipe hands and remind your child that she can always wash her hands right after.

Prevent a sticky situation: Helpful Equipment

Spaghetti, eggs, and cheese are all foods that act like “glue” which is good for creating cups of delicious pasta but make it hard to get out of a muffin pan if not prepared properly. Here are some suggestions for preventing a sticky situation or too much pan scrubbing:

  • If you are using a metal muffin tin, I suggest using non-stick, parchment muffin liners (like these) or using regular paper cupcake/muffin liners and greasing them with oil (either brushing them or using an oil spray). If you don’t have cupcake liners, you can grease the muffin pan really well with oil or non-stick spray. However, you may need to use a butter knife to loosen the edges of the spaghetti cups after they are cool enough to handle.
  • Use a silicone muffin pan like this one. You should still grease the cups with oil or non-stick spray but it will be much easier to clean than a traditional metal muffin pan.

Baked Spaghetti Cups (with Veggies!)

Yummy, healthy weeknight meal perfect to cook with kids.
5 from 3 votes
Prep Time 20 minutes
Cook Time 15 minutes
Total Time 35 minutes
Course Main Course
Cuisine American
Servings 12 cups


  • Muffin pan


  • oil or non-sticky spray for greasing pan or cups
  • 6 ounces spaghetti whole wheat, gluten-free, or any kind you like
  • 2 large eggs
  • 3/4 cup marinara sauce
  • 1 cup baby spinach finely chopped
  • 1/2 cup finely grated carrot
  • 1 cup grated mozzarella cheese or non-dairy alternative
  • Salt and pepper to taste


  • Preheat oven to 375 degrees. Line a 12-cup muffin tin with paper liners and grease with oil or non-stick spray oil. Or use a silicone muffin pan and grease with oil or non-stick spray oil. See more detailed suggestions in post above.
  •  Bring a large pot of salted water to a boil. Break spaghetti into thirds a little at a time then add to the pot. Cook until “al dente” (just cooked through but not too soft) then drain and rinse with cold water.
  • Place drained spaghetti in a large bowl. At this point, kids can use clean siccors to cut the spaghetti into smaller peices if you'd like. Not essential, but fun! Add eggs, marinara sauce, spinach, grated carrot, and ½ cup cheese. Season with salt and pepper. Mix with tongs or a large fork until all ingredients are well combined.
  •  Fill prepared muffin tin with the spaghetti mixture. Press the top of each filled cup down gently then sprinkle each cup with a little of the remaining cheese.
  • Bake until golden brown around the edges, about 13 to 15 minutes. Set aside until cool enough to handle. Serve warm.
Keyword cooking with kids, easy dinner

Other Recipe to Cook Together:

6 Apple Recipes to Cook with Kids

Banana-Pumpkin Blender Muffins

Butternut Squash “Fries” (Sweet or Savory)



  1. Taesha Butler on February 28, 2020 at 12:43 am

    5 stars
    These are really great and make a wonderful freezer stash! I made them for a new mom and she loved how easy they were to store in the freezer, reheat and eat! It made feeding a toddler while caring for a newborn much easier

    • Devin on November 23, 2021 at 6:24 pm

      5 stars
      How long are they good for in the freezer? Just made them for the same reason!

      • Heather on November 24, 2021 at 9:10 am

        Hi Devin, I haven’t ever frozen them before, but I think they would be good for at least a month or two if you wrap them well. Let me know how it goes! 🙂 Heather

    • laura on March 25, 2024 at 4:47 pm

      sorr, i know this was a long time ago but how long in the oven did you reheat and at what temp? =)

      • Heather on April 5, 2024 at 1:05 pm

        Hi, I’m not completely sure. In the oven, I would do 375 in the oven for 10 to 15 minutes. You could also use the microwave or air fryer.

  2. Mabby Howard on October 22, 2020 at 6:22 pm

    5 stars
    I made these with “Just Egg” liquid vegan egg replacer and didn’t use any cheese or cheese substitute. I baked them for about 12 min because I have a kid sensitive to crispier/browner baked foods (cue the “it’s burned!” cries) and they were perfect!

  3. Cindy Albano on February 7, 2021 at 1:00 pm

    These looked great in muffin cups, but fell apart when I tried to remove them! I even let them sit a few minutes. However they tasted good.

    • Heather on February 7, 2021 at 6:59 pm

      Hi Cindy, So sorry that they fell apart. That’s never happened to me. I’d love to trouble shoot it with you if you ever want to try the recipe again. If you use more than 6oz of spaghetti or if the egg mixture falls to the bottom of the bowl before you add the spaghetti to the cups, there might not be enough egg mixed into the spaghetti before baking. Let me know if there’s any other way I can help. Thanks for your feedback! Heather

  4. Lisette Smyth on August 14, 2021 at 11:46 am

    Hello! Just discovered your website and am so excited to try a bunch of the recipes! If I freeze these spaghetti muffin cups, how do you recommend reheating them and for how long? Would I reheat them from frozen or thaw them first? Thanks in advance for your help! I’m clueless in the kitchen lol….

    • Heather on August 15, 2021 at 9:04 pm

      Hi! Thanks so much for being here! I’m happy to help you in any way I can.
      I think you could really do it either way. If you defrost them in the fridge overnight, they will take less time in the oven to reheat. However, since they are individual cups, you could also bake them straight from frozen, but it will take longer. Hope that helps! 🙂 Heather

  5. Benna on October 20, 2021 at 10:52 am

    Hi just making for the first time and not sure if you mean 6 oz cooked spaghetti?

    • Heather on October 20, 2021 at 2:36 pm

      No, you cook it in the recipe so 6 oz uncooked pasta. It’s just a little less than 1/2 a pound. Hope that helps 🙂

  6. Bethany on March 31, 2022 at 6:40 am

    I found your recipe with my Home Ec teacher. We both love it and enjoyed cooking it in class. Thank you very much!

    • Heather on April 10, 2022 at 7:34 pm

      Hi Bethany! That’s so awesome to hear. Thanks so much for using my recipe! 🙂 Heather

  7. Anna on February 27, 2024 at 12:49 pm

    Can you make this without the marina sauce? We have a tomato allergy in our house, wondering if there is another sauce you recommend! Thanks!

    • Heather on February 28, 2024 at 8:19 am

      Hi Anna, You can easily leave the sauce out or sub it for any sauce you enjoy on pasta. A little pesto might add some great flavor or just add in some more veggies and cheese. Let me know how it goes! 🙂 Heather

  8. Charlie on April 16, 2024 at 10:41 am

    How. Long can the stay in the fridge? My son loved it!

    • Heather on April 17, 2024 at 9:55 am

      So glad you enjoyed the recipe! You can store them in the fridge for 3 to 4 days.

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